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All Apps
Categories
collections
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data visualization
(75)
network generation
(58)
network analysis
(56)
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(56)
online data import
(45)
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(35)
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(32)
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(29)
visualization
(28)
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(28)
layout
(21)
core app
(21)
annotation
(21)
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(18)
pathway database
(17)
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(17)
local data import
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import
(17)
gene expression
(16)
functional analysis
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scripting
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PPI-network
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interaction database
(12)
GO annotation
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Network structure
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network dynamics
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network inference
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heat map visualization
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export
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gene regulation
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disease
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cancer data analysis
(8)
attribute generation
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animation
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networks
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linked data
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ID mapping
(7)
gene-disease association
(7)
database
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centrality analysis
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simulation
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Random walk with restart algorithm
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pathway
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network partitioning
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network learning
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molecular structure
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microarrays
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grouping
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social network analysis
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R
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Protein complex
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Pathway finding
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literature mining
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Gene prioritization
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data manipulation
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Connection sub-graph discovery
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structural biology
(4)
SPARQL
(4)
signaling
(4)
set analysis
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sequence similarity
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network alignment
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kegg
(4)
JavaScript
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gene function prediction
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gene co-expression
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disease-disease association
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variant analysis
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shortest paths
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set visualization
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search
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SBML
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network repository
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inference
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genome visualization
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cluster visualization
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bayesian networks
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Local data import
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BridgeDb
Performs ID mapping using BridgeDb and other public or custom database sources.
BridgeDb
Performs ID mapping using BridgeDb and other public or custom database sources.
(20) 13768 downloads
CyTargetLinker
Flexible network extension app
CyTargetLinker
Flexible network extension app
(39) 26197 downloads
JGF App
Import / Export OpenBEL Networks. JSON Graph Format Network App handles more restrictive BEL schema.
JGF App
Import / Export OpenBEL Networks. JSON Graph Format Network App handles more restrictive BEL schema.
(1) 4962 downloads
Omics Visualizer
Import & Visualize several data for the same node
Omics Visualizer
Import & Visualize several data for the same node
(5) 4141 downloads
WikiPathways
WikiPathways web service client and GPML file format importer
WikiPathways
WikiPathways web service client and GPML file format importer
(11) 48242 downloads
CyDataSeries
Add time series and the like to your networks.
CyDataSeries
Add time series and the like to your networks.
(1) 3380 downloads
iRegulon
Detects master regulators and cis-regulatory interactions
iRegulon
Detects master regulators and cis-regulatory interactions
(10) 16581 downloads
KEGGscape
File reader and pathway visualizer for KEGG XML (KGML) files
KEGGscape
File reader and pathway visualizer for KEGG XML (KGML) files
(2) 51755 downloads
Vital AI Graph Visualization
Use Vital AI software to connect to Databases, Servers, and Hadoop/Spark
Vital AI Graph Visualization
Use Vital AI software to connect to Databases, Servers, and Hadoop/Spark
(7) 5682 downloads
Unsupported Plugins for Cytoscape 2.x
AlternativeTableImport
Local data import through savable profiles
AlternativeTableImport
Local data import through savable profiles
(2)
DisGeNET
Queries and analyzes networks of diseases and their associated genes.
DisGeNET
Queries and analyzes networks of diseases and their associated genes.
(6)
GPML-Plugin
Enables import of GPML file via import menu.
GPML-Plugin
Enables import of GPML file via import menu.
(10)
KGMLReader
File reader and pathway visualizer for KEGG XML (KGML) files
KGMLReader
File reader and pathway visualizer for KEGG XML (KGML) files
(61)
CyThesaurus-ID-Mapping
Performs ID mapping using BridgeDb and other public or custom database sources.
CyThesaurus-ID-Mapping
Performs ID mapping using BridgeDb and other public or custom database sources.
(10)
Genoscape
Visually integrates gene expression data sets from GenoScript and KEGG pathways into networks.
Genoscape
Visually integrates gene expression data sets from GenoScript and KEGG pathways into networks.
(12)
GraphMLReader
Reader plugin for XML network files in GraphML format
GraphMLReader
Reader plugin for XML network files in GraphML format
(0)
OWLPlugin
Builds a network in Cytoscape from a user-provided OWL/RDF ontology and it implements a SPARQL module
OWLPlugin
Builds a network in Cytoscape from a user-provided OWL/RDF ontology and it implements a SPARQL module
(0)