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data visualization
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network analysis
(62)
network generation
(61)
graph analysis
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online data import
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automation
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utility
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core app
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annotation
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layout
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pathway database
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import
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gene expression
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network comparison
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local data import
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PPI-network
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interaction database
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Network structure
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scripting
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network dynamics
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GO annotation
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regulatory networks
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Topology
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network inference
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heat map visualization
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export
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pathway
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networks
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network manipulation
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functional module detection
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cancer data analysis
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network partitioning
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gene regulation
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disease
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database
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attribute generation
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animation
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molecular structure
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linked data
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ID mapping
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grouping
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gene-disease association
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Connection sub-graph discovery
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centrality analysis
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3d visualization
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simulation
(6)
Random walk with restart algorithm
(6)
network learning
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microarrays
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cluster visualization
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social network analysis
(5)
shortest paths
(5)
sequence similarity
(5)
SBML
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R
(5)
Protein complex
(5)
Pathway finding
(5)
network alignment
(5)
Gene prioritization
(5)
gene co-expression
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data manipulation
(5)
structural biology
(4)
SPARQL
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signaling
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search
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literature mining
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kegg
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JavaScript
(4)
gene function prediction
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flux analysis
(4)
variant analysis
(3)
set visualization
(3)
set analysis
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python
(3)
protein dynamics
(3)
post-translational modification
(3)
pathway reconstruction
(3)
Pathway analysis
(3)
network repository
(3)
inference
(3)
graph clustering
(3)
genome visualization
(3)
disease-disease association
(3)
Community detection
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Cancer
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Boolean Network
(3)
bayesian networks
(3)
JavaScript
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CX Support
Core App: CX JSON file reader and writer
CX Support
Core App: CX JSON file reader and writer
(3) 74589 downloads
cyREST
Core App: Language-agnostic RESTful API
cyREST
Core App: Language-agnostic RESTful API
(4) 126192 downloads
cyBrowser
Core App: Add HTML Browser to Cytoscape
cyBrowser
Core App: Add HTML Browser to Cytoscape
(1) 41560 downloads
D3.js Exporter
Network and Table Data Exporter for D3.js
D3.js Exporter
Network and Table Data Exporter for D3.js
(1) 12423 downloads
Unsupported Plugins for Cytoscape 2.x
