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Categories
data visualization
(78)
network analysis
(62)
network generation
(61)
graph analysis
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Network structure
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GO annotation
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export
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pathway
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networks
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cancer data analysis
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network partitioning
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gene regulation
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disease
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animation
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molecular structure
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linked data
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gene-disease association
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Connection sub-graph discovery
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centrality analysis
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3d visualization
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simulation
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Random walk with restart algorithm
(6)
network learning
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microarrays
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cluster visualization
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social network analysis
(5)
shortest paths
(5)
sequence similarity
(5)
SBML
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R
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Protein complex
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Pathway finding
(5)
network alignment
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Gene prioritization
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gene co-expression
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structural biology
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search
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kegg
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JavaScript
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gene function prediction
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flux analysis
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variant analysis
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set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
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Pathway analysis
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network repository
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inference
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graph clustering
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genome visualization
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disease-disease association
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Community detection
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Cancer
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Boolean Network
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bayesian networks
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Molecular structure
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chemViz2
Cheminformatics App for Cytoscape
chemViz2
Cheminformatics App for Cytoscape
(7) 20529 downloads
Mclique
Maximal Cliques in a given Cytoscape network, sorted by size
Mclique
Maximal Cliques in a given Cytoscape network, sorted by size
(15) 10765 downloads
XlinkCyNET
Generate residue-to-residue connections provided by XL-MS in protein interaction networks
XlinkCyNET
Generate residue-to-residue connections provided by XL-MS in protein interaction networks
(4) 12514 downloads
CyToStruct: external application hooking
Launching arbitrary external apps (such as viewers) for nodes/edges
CyToStruct: external application hooking
Launching arbitrary external apps (such as viewers) for nodes/edges
(27) 19998 downloads
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
(9) 7542 downloads
Unsupported Plugins for Cytoscape 2.x
ChemViz
Visualizes chemical structure of each compound in chemical network with original interface.
ChemViz
Visualizes chemical structure of each compound in chemical network with original interface.
(8)
structureViz
Enables user to traverse from biological networks to detailed view of their structures.
structureViz
Enables user to traverse from biological networks to detailed view of their structures.
(4)
