• Submit an App
    • Submit an App
    • Guide to 3.0 App Development
  • Sign In

All Apps

Platforms

  • Desktop Apps
  • Service Apps
  • Web Apps

Categories

  • data visualization (78)
  • network analysis (64)
  • network generation (63)
  • graph analysis (59)
  • online data import (47)
  • automation (47)
  • clustering (38)
  • integrated analysis (37)
  • systems biology (33)
  • visualization (32)
  • utility (32)
  • enrichment analysis (32)
  • data integration (27)
  • core app (25)
  • annotation (24)
  • layout (22)
  • import (19)
  • pathway database (18)
  • ontology analysis (18)
  • gene expression (18)
  • PPI-network (16)
  • network comparison (16)
  • local data import (16)
  • interaction database (16)
  • functional analysis (16)
  • Network structure (14)
  • scripting (13)
  • regulatory networks (13)
  • network dynamics (13)
  • GO annotation (12)
  • Topology (10)
  • network inference (10)
  • heat map visualization (10)
  • export (10)
  • pathway (9)
  • networks (9)
  • network manipulation (9)
  • functional module detection (9)
  • disease (9)
  • cancer data analysis (9)
  • network partitioning (8)
  • gene regulation (8)
  • database (8)
  • attribute generation (8)
  • animation (8)
  • molecular structure (7)
  • linked data (7)
  • ID mapping (7)
  • grouping (7)
  • gene-disease association (7)
  • Connection sub-graph discovery (7)
  • centrality analysis (7)
  • 3d visualization (7)
  • simulation (6)
  • Random walk with restart algorithm (6)
  • network learning (6)
  • microarrays (6)
  • gene co-expression (6)
  • cluster visualization (6)
  • social network analysis (5)
  • shortest paths (5)
  • sequence similarity (5)
  • SBML (5)
  • R (5)
  • Protein complex (5)
  • Pathway finding (5)
  • network alignment (5)
  • Gene prioritization (5)
  • data manipulation (5)
  • structural biology (4)
  • SPARQL (4)
  • signaling (4)
  • search (4)
  • literature mining (4)
  • kegg (4)
  • JavaScript (4)
  • gene function prediction (4)
  • flux analysis (4)
  • bayesian networks (4)
  • variant analysis (3)
  • subnetwork extraction (3)
  • set visualization (3)
  • set analysis (3)
  • python (3)
  • protein dynamics (3)
  • post-translational modification (3)
  • pathway reconstruction (3)
  • Pathway analysis (3)
  • non-coding RNA (3)
  • network repository (3)
  • inference (3)
  • graph clustering (3)
  • genome visualization (3)
  • drug repurposing (3)
  • disease module (3)
  • disease-disease association (3)
  • Cytoscape (3)
  • Community detection (3)
  • Cancer (3)
  • Boolean Network (3)

Regulatory networks

Search for posts about regulatory networks →

Ask a question about regulatory networks →

ANIMO
ANIMO (Analysis of Networks with Interactive MOdeling) lets you model biological networks and compare their dynamics with experimental data.
ANIMO
ANIMO (Analysis of Networks with Interactive MOdeling) lets you model biological networks and compare their dynamics with experimental data.
(1)  49075 downloads
cymirCNV
miRNA gene correlation network visualization
cymirCNV
miRNA gene correlation network visualization
(1)  1117 downloads
CytoAsp
CytoAsp
(0)  3476 downloads
DAPath
Disease Associated Path Analyzer
DAPath
Disease Associated Path Analyzer
(0)  5117 downloads
iRegulon
Detects master regulators and cis-regulatory interactions
iRegulon
Detects master regulators and cis-regulatory interactions
(12)  39422 downloads
RNA
Regulatory Network Analyzer generates/analyzes a regulatory network and states transition network and computes informations like entropy.
RNA
Regulatory Network Analyzer generates/analyzes a regulatory network and states transition network and computes informations like entropy.
(2)  14460 downloads
TETRAMER
A Temporal Transcription regulation modeler to predict master regulators
TETRAMER
A Temporal Transcription regulation modeler to predict master regulators
(26)  3363 downloads
CyGenexpi
Uncover regulatory interactions from time course data
CyGenexpi
Uncover regulatory interactions from time course data
(1)  11658 downloads
CyTargetLinker
Flexible network extension app
CyTargetLinker
Flexible network extension app
(40)  52100 downloads
cyTransFinder
Signal Transduction Pathway Finder
cyTransFinder
Signal Transduction Pathway Finder
(3)  29940 downloads
FunCoup
Import and analyze Cytoscape networks from FunCoup
FunCoup
Import and analyze Cytoscape networks from FunCoup
(10)  2924 downloads
Rene
Regulatory Network Enhancing Plugin - ReNE allows users to enhance standard KEGG/Reactome pathways wit
Rene
Regulatory Network Enhancing Plugin - ReNE allows users to enhance standard KEGG/Reactome pathways wit
(12)  41712 downloads
SIREN
Signing of Regulatory Networks
SIREN
Signing of Regulatory Networks
(3)  4258 downloads

About • Contact Us Wall of Apps