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data visualization
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network analysis
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export
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pathway
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Random walk with restart algorithm
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network learning
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microarrays
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shortest paths
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sequence similarity
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R
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Protein complex
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search
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kegg
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JavaScript
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
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Pathway analysis
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network repository
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inference
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graph clustering
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genome visualization
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disease-disease association
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Community detection
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Cancer
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Boolean Network
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bayesian networks
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Cluster visualization
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boundaryLayout
A Force-Directed Network Layout with Custom Boundary Constraints
boundaryLayout
A Force-Directed Network Layout with Custom Boundary Constraints
(2) 10550 downloads
CoordinatesLayout
Load a graph with a layout that locates its nodes according to predefined 2D coordinates (typically GPS coordinates).
CoordinatesLayout
Load a graph with a layout that locates its nodes according to predefined 2D coordinates (typically GPS coordinates).
(9) 4911 downloads
MSClustering
an efficient app for hierarchical clustering and phylogenetics of complex networks
MSClustering
an efficient app for hierarchical clustering and phylogenetics of complex networks
(55) 2483 downloads
ClustnSee 3
clustering, module exploration and annotation
ClustnSee 3
clustering, module exploration and annotation
(0) 88 downloads
cyPlot
A utility to display data plots
cyPlot
A utility to display data plots
(1) 14265 downloads
YoshikoStandalone
Heuristic algorithms for weighted (k) cluster-editing. Works with Cytoscape 3.7.
YoshikoStandalone
Heuristic algorithms for weighted (k) cluster-editing. Works with Cytoscape 3.7.
(4) 1905 downloads
Unsupported Plugins for Cytoscape 2.x
