KEGGscape

File reader and pathway visualizer for KEGG XML (KGML) files
Categories: automation, data integration, data visualization, local data import, pathway database, visualization
# KEGGScape KEGGscape imports KGML(KEGG pathway XML). ## Quick Start https://github.com/idekerlab/KEGGscape/#quick-start ## version 0.9.x - Built with **java11**(, compatible with Cytoscape 3.8.0 or later). - In global metabolism map, create nodes only for compound. - Add gene IDs to the global map reaction edges. ### About version 0.8.x KEGGscape 0.8.x has REST API. You can import KEGG pathway to Cytoscape by requesting http://localhost:1234/keggscape/v1/THE_KEGG_PATHWAY_ID for example you can import http://www.genome.jp/dbget-bin/www_bget?eco00010 by requesting http://localhost:1234/keggscape/v1/eco00010
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0.9.1

Works with Cytoscape 3.8

0.9.0

Works with Cytoscape 3.8

0.8.2

Works with Cytoscape 3.6

0.8.1

Works with Cytoscape 3.6

0.8.0

Works with Cytoscape 3.6

0.7.3

Works with Cytoscape 3.6

0.7.0

Works with Cytoscape 3.1

0.5.6

Works with Cytoscape 3.1

Release Notes

add signaling edge attributes

0.5.5

Works with Cytoscape 3.1

Release Notes

removed target arrow type (because KGML does NOT have edge direction info)

0.5.4

Works with Cytoscape 3.1

Release Notes

fixed edge connection problem

0.5.3

Works with Cytoscape 3.1

0.5.2

Works with Cytoscape 3.1

Release Notes

fixed import 01110 "Biosynthesis of secondary metabolites"

0.5.1

Works with Cytoscape 3.1

Release Notes

removed unfinished GUI menu from menubar

0.5.0

Works with Cytoscape 3.1

Release Notes

initial release
CYTOSCAPE 3

Version 0.9.1

License Click here

Released 15 May 2021

Works with Cytoscape 3.8

Download Stats Click here