Package es.imim.DISGENET.validation

Class NetworkValidation

java.lang.Object
es.imim.DISGENET.validation.NetworkValidation
public class NetworkValidation extends Object

  • Constructor Summary

    Constructors
    Constructor
    Description
    NetworkValidation()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    static boolean
    isExpandedWithGenes(org.cytoscape.model.CyNetwork cyNetwork)
    Checks if the variant network is already expanded.
    static boolean
    isForeignNet(org.cytoscape.model.CyNetwork cyNetwork)
    Checks if the current network is original DISGENET network or not.
    static boolean
    isProjectionNet(org.cytoscape.model.CyNetwork cyNetwork, String interaction)
     
    static boolean
    isVariantNet(org.cytoscape.model.CyNetwork cyNetwork)
    Checks if the current network is a variant-disease network.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • NetworkValidation

      public NetworkValidation()

  • Method Details

    • isVariantNet

      public static boolean isVariantNet(org.cytoscape.model.CyNetwork cyNetwork)
      Checks if the current network is a variant-disease network.
      Parameters:
      cyNetwork - the network to check.
      Returns:
      true in case the network is a variant network or false in case there's no network or isn't a variant.

    • isProjectionNet

      public static boolean isProjectionNet(org.cytoscape.model.CyNetwork cyNetwork, String interaction)

    • isExpandedWithGenes

      public static boolean isExpandedWithGenes(org.cytoscape.model.CyNetwork cyNetwork)
      Checks if the variant network is already expanded.
      Parameters:
      cyNetwork - the network to check.
      Returns:
      true in case the variant network us already expanded false in case not.

    • isForeignNet

      public static boolean isForeignNet(org.cytoscape.model.CyNetwork cyNetwork)
      Checks if the current network is original DISGENET network or not.
      Parameters:
      cyNetwork - the network to check the origin.
      Returns:
      true in case the network was formed in disgenet or false in case not.