Package es.imim.DISGENET.internal.enrichment

Class AutomationGeneEnrichmentTask

java.lang.Object

org.cytoscape.work.AbstractTask

es.imim.DISGENET.internal.enrichment.AbstractEnrichmentTask

es.imim.DISGENET.internal.enrichment.AutomationGeneEnrichmentTask

All Implemented Interfaces:

org.cytoscape.work.ObservableTask, org.cytoscape.work.Task

public class AutomationGeneEnrichmentTask
extends AbstractEnrichmentTask
implements org.cytoscape.work.ObservableTask

Field Summary

Fields

Modifier and Type	Field	Description
String	columnName
Integer	minNumGenes
boolean	newNetwork
double	pvalueThreshold
String	source
String	typeId
String	universe

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor	Description
AutomationGeneEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView, Long selectedNetwork, String columnName, String source, String typeId, String universe, boolean newNetwork, double pvalueThreshold, Integer minNumGenes)

Method Summary

Modifier and Type	Method	Description
List<Class<?>>	getResultClasses()
<R> R	getResults(Class<? extends R> type)
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class es.imim.DISGENET.internal.enrichment.AbstractEnrichmentTask

getConn, getCurrNetwork, getEnrichList, listNodeColumnsNames, openConnection, setUrlParams

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.cytoscape.work.Task

cancel

Field Details

columnName

public String columnName

source

public String source

typeId

public String typeId

universe

public String universe

newNetwork

public boolean newNetwork

pvalueThreshold

public double pvalueThreshold

minNumGenes

public Integer minNumGenes

Constructor Details

AutomationGeneEnrichmentTask

public AutomationGeneEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView,
 Long selectedNetwork,
 String columnName,
 String source,
 String typeId,
 String universe,
 boolean newNetwork,
 double pvalueThreshold,
 Integer minNumGenes)

Method Details

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Overrides:

run in class AbstractEnrichmentTask

Throws:

Exception

getResults

public <R> R getResults(Class<? extends R> type)

Specified by:

getResults in interface org.cytoscape.work.ObservableTask

getResultClasses

public List<Class<?>> getResultClasses()

Specified by:

getResultClasses in interface org.cytoscape.work.ObservableTask