WikiDataScape

A WikiData explorer for Cytoscape
### WikiDataScape **WikiDataScape** is a Cytoscape app for interactive browsing of [https://www.wikidata.org/ WikiData]. Wikidata is a free and open knowledge base that can be read and edited by both humans and machines, and acts as central storage for **structured data**. There are several active WikiProjects that are dedicated to annotating biological entities. See: [https://en.wikipedia.org/wiki/Portal:Gene_Wiki Gene Wiki] or [https://www.wikidata.org/wiki/User:ProteinBoxBot ProteinBoxBot]. The purpose of this app is for the query, navigation, and data discovery of linked data, with WikiData as the data source. ### Usage [![Link to Youtube](https://img.youtube.com/vi/DJko2ob_zz4/1.jpg)](https://www.youtube.com/watch?v=DJko2ob_zz4) (click to play!) Click `WikiData Item Search` in the Apps title menu. Type in an item to search for and hit *enter* (on your keyboard). Select a result and click `Use this item`. A node will appear in your current network view. All ID properties will be populated in the node table below. Select one or more nodes and right click. Under `Properties`, all properties for all selected items will appear, allowing you to navigate the knowledge base. Clicking `Perform "What links here?" query` will find all items that link to the selected nodes. This populates the `What links here` submenu. For more details, see the [https://github.com/stuppie/WikiDataScape/wiki/WikiDataScape Wiki page].

1.0.8

Works with Cytoscape 3.4

Release Notes

- Color edges by property type - Color nodes randomly by "instance of" property. Preserve color mapping when new properties are added to the network

1.0.7

Works with Cytoscape 3.4

Release Notes

- raise URL length limit - support spaces & special characters in item search

1.0.6

Works with Cytoscape 3.4

Release Notes

- sort properties in context menu

1.0.5

Works with Cytoscape 3.4

Release Notes

First release

CYTOSCAPE 3

Version 1.0.8

Released 23 Aug 2016

Works with Cytoscape 3.4

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