Works with Cytoscape
3.0
Release Notes
DI counted with PAML now based on 2 different columns.
1) Column "PAML" contains mathematically correct Ka/Ks data (Ks != 0)
2) Column "PAML extended" contains specific data.
a) If both Ka and Ks are equal to 0 (0/0, indetermination case) the column contains 100 for every ortholog.
b) If only Ks is equal to 0 (N/0, infinity case) the column contains 10000 for every ortholog.
It is still only first glance on Ka/Ks. DI analysis for every pair gene-ortholog with all PAML measures can be found in output PAML directory