mcode

Clusters a given network based on topology to find densely connected regions.
Categories: clustering, graph analysis
MCODE finds clusters (highly interconnected regions) in a network. Clusters mean different things in different types of networks. For instance, clusters in a protein-protein interaction network are often protein complexes and parts of pathways, while clusters in a protein similarity network represent protein families.
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1.1.0

To add this app directly in Cytoscape Web, open Apps → Manage Apps, select the Install from URL tab, and paste this manifest URL.

Select the URL to copy it manually.

Works with Cytoscape

Release Notes

- Adds the **MCODE Cluster Layout**. - Minor UI improvements.

1.0.0

To add this app directly in Cytoscape Web, open Apps → Manage Apps, select the Install from URL tab, and paste this manifest URL.

Select the URL to copy it manually.

Works with Cytoscape

Release Notes

This is the first release of MCODE for Cytoscape Web. It is a port of the MCODE app for [Cytoscape Desktop](https://cytoscape.org/), and it finds clusters (highly interconnected regions) in a network using the same algorithm and parameters as the desktop version.
CYTOSCAPE WEB

Install in Cytoscape Web
To add this app directly in Cytoscape Web, open Apps → Manage Apps, select the Install from URL tab, and paste this manifest URL.

Select the URL to copy it manually.

Version 1.1.0

License Click here

Released 8 Oct 2026

Works with Cytoscape Web

Install Stats Click here