Categories: data visualization, heat map visualization, integrated analysis, pathway, SBML, Topology

# IDARE IDARE is a Cytoscape 3 app (versions 3.4 and above), for subnetwork generation and data visualisation. ## Features * Automated and manual layouting of data from multiple sources on a single node using a variety of layout types * Available visualisation types include scatter plots, graphs, heatmaps, time series and bar charts * Parseable formats include excel sheets, tab/comma separated value files and GEO SOFT files * Generation of connected subnetworks and clickable links between these networks * Addition of gene nodes and further information based on information from COBRA annotations in sbml files (see [Schellenberger et al 2011](http://www.nature.com/nprot/journal/v6/n9/abs/nprot.2011.308.html) )

Authors:

• Thomas Pfau (University of Luxembourg)
• Thomas Sauter (University of Luxembourg)
• Mafalda Galhardo
• Jake Lin