Cytoscape App Store

Details
Release History

Categories: interaction database, network generation, online data import, pathway database

A GUI web service client app for the Pathway Commons integrated BioPAX pathway database, [http://www.pathwaycommons.org/pc2/ PC2 web service]. **NOTE:** The latest version qequires Java 8 and Cytoscape 3.6. For more information, follow the links on this page.

Authors:

1.2.3

Works with Cytoscape 3.6

Release Notes

Minor update. Removes dependency on pax-logging-api.

1.2.2

Works with Cytoscape 3.6

Release Notes

Minor update: implemented *NetworkSearchTaskFactory* (two options: quick network query or dialog UI); renamed and slightly improved the visual styles (Binary *SIF* and *Hypergraph*); changed how values for 'name' attr. column are generated (better works with link-out).

1.2.1

Works with Cytoscape 3.3

Release Notes

Minor release: just updated some of its dependencies; makes sure it works with the PC9 web services and Cy 3.5.1, etc.

1.2.0

Works with Cytoscape 3.3

Release Notes

Simplified and improved the user interface (see the new screenshots). Updated the dependencies, tested with Pathway Commons PC8 web services and Cytoscqpe 3.4.0. Starting this version, the app does not require nor depends upon the core Cytoscape BioPAX reader app (it's got own reader and style, though very similar)!

1.1.0

Works with Cytoscape 3.2

Release Notes

Fixes some deadlocks and initialization issues. Should work with Cytoscape 3.2 and Java 7, but better use Cytoscape 3.3.0 or later with the updated core [http://apps.cytoscape.org/apps/biopaxreader BioPAX Reader app] v3.3.0.1 and Java 8.